FILL IN THE BLANKS BELOW TO FIND MATCHING PATTERNS IN A DNA SEQUENCE: For a batch of pattern queries, click here. Name of DNA: Shape of DNA Molecule: Linear Circular Import From File: Format: ASCII/TXT GENBANK_HTML/TXT FASTA_TXT FASTA_HTML Enter a file path below: DNA Sequence Query (5' to 3' strand): Analysis Parameters: Analyze the Whole Molecule Analyze Part of the Molecule From Position To Position Search the upper strand Search the lower strand Maximum Pattern Span (bps): Maximum length including N's and repeats ENTER A PATTERN: A=Adenine C=Cytosine G=Guanine T=Thymidine B=Not A D=Not C H=Not G V=Not T N=A|G|C|T R=A|G Y=C|T W=A|T S=C|G K=G|T M=A|C EMPTY ANNOTATIONS: ATTN{3}G=ATTNNNG ATTN{3,}G=ATT(at least three repeats of N)G ATTN{3,6}=ATT(3 to 6 N repeats)G A(TTN){3}G=ATTNTTNTTNG A(TTN){3,6}G=A(3 to 6 TTN repeats)G Enable HELIX STABILITY PROFILE: WEB-THERMODYN Temperature (° C): Salt Concentration (mM): Start Position Step Size: Window Size: Number of Markers: Dataset: Current: SantaLucia, 1998 Previous: Breslauer & Marky, 1986 Max. Computing Time (sec): 30 60 90 Enable HELIX STABILITY RANK: THERMOCALC © Yanlin Huang, David Kowalski, Dept. of Cancer Genetics, Roswell Park Cancer Institute, Buffalo, NY 14263